PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BL_EBACA7012.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 276aa    MW: 31923.2 Da    PI: 8.4872
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BL_EBACA7012.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1423e-1382161190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fYn Y+ e+GF ++  + +++  ++  t ++ vC + gk+++e+++         +  ++C a +++++++d+ w ++++++eHnH+
  Traes_7BL_EBACA7012.2  82 DFYNLYSWEIGFGIKYGQCRRN-VEKCKTVQDIVCGCAGKPRRENSH---------SVCCQCLALMRLHRTSDHGWFIHDVKHEHNHS 159
                            6*******************99.55568999*********9987666.........99*****************************9 PP

                   FAR1  89 la 90 
                            ++
  Traes_7BL_EBACA7012.2 160 MS 161
                            86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-882161IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MPYFSNVPDI DDAEETQPES HPIPVPWTQR VRLGKIPDSR ATLSGRKSAL KKAMRNYADK  60
KSEFVVKPEI GQEFDSLAEA YDFYNLYSWE IGFGIKYGQC RRNVEKCKTV QDIVCGCAGK  120
PRRENSHSVC CQCLALMRLH RTSDHGWFIH DVKHEHNHSM SQTCGEKLHW PSHRHIDAHA  180
KDIVMHLRNN NISLSKTFGV IASFFGDMEN LPFNKRSLRY LCKRMNQQQG DDDIRKTIQL  240
FSELKEKDPN FVDSVLVDEG SKIRALMWTD GKSRHQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753620.11e-96PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
TrEMBLW5HRP30.0W5HRP3_WHEAT; Uncharacterized protein
STRINGMLOC_58296.11e-172(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.12e-14FAR1-related sequence 11
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]